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Workflows available

Assembly_Fetch

Augur

BaseSpace_Fetch

Cauris_CladeTyper

Concatenate_Column_Content

Core_Gene_SNP

CZGenEpi_Prep

Find_Shared_Variants

Freyja Wastewater Analysis Series

GAMBIT_Query

Kraken2

kSNP3

Lyve_SET

MashTree_FASTA

Mercury_Prep_N_Batch

Pangolin Update

RASUSA

Rename_FASTQ

Snippy_Streamline

Snippy_Tree

Snippy_Variants

SRA_Fetch

TBProfiler_tNGS

Terra_2_GISAID

Terra_2_NCBI

TheiaCoV Workflow Series

TheiaEuk Workflow Series

TheiaMeta Workflow Series

TheiaProk Workflow Series

TheiaValidate

Transfer_Column_Content

Usher_PHB

VADR_Update

Zip_Column_Content

Guide to Phylogenetics

Overview

This workflow will create a zip file that contains all of the items in a column in a Terra Table.

Inputs

This workflow runs on the set level.

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Tasks/Actions

The zip_files task will zip the indicated files into a compressed file. The name of this output file is set by the user and ends with the .zip extension.

Outputs

<aside> 💡 Please note that if you run this workflow on the same Terra set (the same group of samples can be in multiple Terra sets), the results will overwrite each other. We recommend either:

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