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Workflows available
Assembly_Fetch
Augur
BaseSpace_Fetch
Cauris_CladeTyper
Concatenate_Column_Content
Core_Gene_SNP
CZGenEpi_Prep
Find_Shared_Variants
Freyja Wastewater Analysis Series
GAMBIT_Query
Kraken2
kSNP3
Lyve_SET
MashTree_FASTA
Mercury_Prep_N_Batch
Pangolin Update
RASUSA
Rename_FASTQ
Snippy_Streamline
Snippy_Tree
Snippy_Variants
SRA_Fetch
TBProfiler_tNGS
Terra_2_GISAID
Terra_2_NCBI
TheiaCoV Workflow Series
TheiaEuk Workflow Series
TheiaMeta Workflow Series
TheiaProk Workflow Series
TheiaValidate
Transfer_Column_Content
Usher_PHB
VADR_Update
Zip_Column_Content
Guide to Phylogenetics
Overview
This workflow will create a zip file that contains all of the items in a column in a Terra Table.
Inputs
This workflow runs on the set level.
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Tasks/Actions
The zip_files task will zip the indicated files into a compressed file. The name of this output file is set by the user and ends with the .zip extension.
Outputs
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💡 Please note that if you run this workflow on the same Terra set (the same group of samples can be in multiple Terra sets), the results will overwrite each other. We recommend either:
- renaming the output variable, or
- creating a new set every time you run the workflow.
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