[Image- lucid chart of workflow. Should show the key tasks described below]
Page Contents
Freyja Wastewater Analysis Series
This sample-level workflow receives a read file or a pair of read files (FASTQ), compressed or uncompressed, and returns a new, renamed and compressed FASTQ file.
If a reverse read (read2) is provided, the files get renamed to the provided new_filename input with the notation <new_filename>_R1.fastq.gz and <new_filename>_R2.fastq.gz. If only read1 is provided, the file is renamed to <new_filename>.fastq.gz.
✉️ [email protected] | X (formerly Twitter) | LinkedIn | 🌐 Website