TheiaCoV overview v1.0.1
Page Contents
Workflows available
Assembly_Fetch
Augur
Concatenate_Column_Content
Core_Gene_SNP
Freyja Wastewater Analysis
Kraken2
kSNP3
Lyve_SET
MashTree_FASTA
Mercury_Prep_N_Batch
Pangolin Update
Rasusa
Snippy_Streamline
Snippy_Tree
Snippy_Variants
SRA_Fetch
Terra_2_GISAID
Terra_2_NCBI
TheiaCoV Genomic Characterization
TheiaEuk
TheiaMeta
TheiaProk Workflow Series
TheiaValidate
Usher_PHB
VADR_Update
Zip_Column_Content
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ℹ️ All default parameters are set for SARS-CoV-2 analysis. Where defaults need to be adjusted for different organisms, we provide several input JSON files that contain the required changes for each organism.
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🗝️ Key resources
Docker Image and Reference Materials for SARS-CoV-2 Genomic Characterization
Workspace Reference Materials for MPXV Genomic Characterization
Overview
Shared components for all workflows
TheiaCoV_Illumina_PE
TheiaCoV_Illumina_SE
TheiaCoV_ClearLabs
TheiaCoV_ONT
TheiaCoV_FASTA
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