TheiaCoV Overview v2.3.0

PHVG workflows

TheiaCoV Characterization

TheiaCoV Epidemiology

Mercury workflows

VADR_Update

Pangolin_Update

Page Contents

<aside> ℹ️ All default parameters are set for SARS-CoV-2 analysis. Where defaults need to be adjusted for different organisms, we provide several input JSON files that contain the required changes for each organism.

</aside>

<aside> 🗝️ Key resources

Docker Image and Reference Materials for SARS-CoV-2 Genomic Characterization

Workspace Reference Materials for MPXV Genomic Characterization

• HIV
• WNV
• Flu </aside>

Overview

Shared components of all workflows

TheiaCoV_Illumina_PE

TheiaCoV_Illumina_SE

TheiaCoV_ClearLabs

TheiaCoV_ONT

TheiaCoV_FASTA

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