Page Contents
TheiaCoV Genomic Characterization
Terra_2_GISAID programmatically submits SARS-CoV-2 assembly files to GISAID.
This workflow expects data that has been prepared for submission using either Mercury_Batch or Mercury_Prep_N_Batch.
<aside> ⚠️ To obtain a client-ID, contact [email protected] and include your username in your request.
</aside>
The optional variable frameshift_notification has three options that correspond to the associated web-browser options:
“catch_all” - “Notify me about ALL DETECTED FRAMESHIFTS in this submission for reconfirmation of affected sequences” “catch_novel” [DEFAULT] - “Notify me only about NOT PREVIOUSLY REPORTED FRAMESHIFTS in this submission for reconfirmation of affected sequences” “catch_none” - “I confirm ANY FRAMESHIFTS in this submission and request their release without confirmation by a curator”
✉️ [email protected] | X (formerly Twitter) | LinkedIn | 🌐 Website