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Welcome to Theiagen’s Public Health Resources, which hosts all of our documentation and public tutorials. If you have any questions, please reach out via one of the email addresses above.

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PHB v2.1.0

Docker Image and Reference Materials for SARS-CoV-2 Genomic Characterization

Workspace Reference Materials for MPXV Genomic Characterization

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Documentation


Theiagen workflows are available in the GitHub repository ‣. Documentation for each version of the GitHub repositories is available below, alongside other resources for using the workflows and interpreting their outputs.

Public Health Bioinformatics Documentation

PHB v2.2.1 and above

PHB v2.2.0

PHB v2.0.1

PHB v2.0.0

Tool Documentation

tbp-parser

GAMBIT

Archived Documentation

Documentation Archive

Standard Operating Procedures

All SOPs

Guidance Documentation

Guide to Getting Started with Genomic Analysis in Public Health

Guide to Running Workflows on a Command-Line Interface (CLI)

Guide to Phylogenetics

Other Resources

Help with using Terra

About Theiagen


Theiagen develops bioinformatics solutions for public health labs, and then trains and supports scientists to use these. If you would like to work with Theiagen, please get in contact.


GNU Affero General Public License v3.0