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Workflow documentation and resources

Analysis Approaches for Genomic Data: This diagram shows the Theiagen workflows (green boxes) available on Terra for analysis of genomic data in public health and the workflows that may be used consecutively (arrows). The blue boxes describe the major functions that these workflows undertake. Descriptions of these functions and their workflows can be found in the Getting Started with Genomic Analysis in Public Health section below. The yellow boxes show functions that may be undertaken independently of workflows on Terra.

Analysis Approaches for Genomic Data: This diagram shows the Theiagen workflows (green boxes) available on Terra for analysis of genomic data in public health and the workflows that may be used consecutively (arrows). The blue boxes describe the major functions that these workflows undertake. Descriptions of these functions and their workflows can be found in the Getting Started with Genomic Analysis in Public Health section below. The yellow boxes show functions that may be undertaken independently of workflows on Terra.

All workflows

All SOPs

Guide to Phylogenetics

GAMBIT Public Documentation

tbp-parser

Changes since PHB v1.3.0

Getting Started with Genomic Analysis in Public Health

Help with using Terra

Running Workflows on a Command-Line Interface (CLI)

Contributing to Theiagen’s Public Health Bioinformatics Repository

GNU Affero General Public License v3.0