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Terra_2_GISAID programmatically submits SARS-CoV-2 assembly files to GISAID.
This workflow expects data that has been prepared for submission using either Mercury_Batch or Mercury_Prep_N_Batch (recommended).
<aside> ⚠️ To obtain a client-ID, contact [email protected] and include your username in your request.
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The optional variable frameshift_notification has three options that correspond to the associated web-browser options:
“catch_all” - “Notify me about ALL DETECTED FRAMESHIFTS in this submission for reconfirmation of affected sequences” “catch_novel” [DEFAULT] - “Notify me only about NOT PREVIOUSLY REPORTED FRAMESHIFTS in this submission for reconfirmation of affected sequences” “catch_none” - “I confirm ANY FRAMESHIFTS in this submission and request their release without confirmation by a curator”
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