Page Contents

Workflows available

Assembly_Fetch

Augur

BaseSpace_Fetch

Cauris_CladeTyper

Concatenate_Column_Content

Core_Gene_SNP

Create_Terra_Table

CZGenEpi_Prep

Find_Shared_Variants

Freyja Workflow Series

GAMBIT_Query

Kraken2

kSNP3

Lyve_SET

MashTree_FASTA

Mercury_Prep_N_Batch

NCBI-AMRFinderPlus

Pangolin Update

RASUSA

Rename_FASTQ

Samples_to_Ref_Tree

Snippy_Streamline

Snippy_Streamline_FASTA

Snippy_Tree

Snippy_Variants

SRA_Fetch

TBProfiler_tNGS

Terra_2_GISAID

Terra_2_NCBI

TheiaCoV Workflow Series

TheiaEuk

TheiaMeta

TheiaProk Workflow Series

TheiaValidate

Transfer_Column_Content

Usher_PHB

VADR_Update

Zip_Column_Content

Overview

This set-level workflow will create a file containing all of the items from a given column in a Terra Data Table. This is useful when you want to investigate many results files. There is a video available with more information about the Concatenate_Column_Content workflow: 📺 Workflow Focus: Concatenate_Column_Content

Inputs

Tasks/Actions

The cat_files task will concatenate the indicated files into a single file with the name provided.

Outputs

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