This major release simplifies the usage of the TheiaCoV workflows and does major restructuring on all inputs and outputs on several workflows, including TheiaCoV, TheiaProk, TheiaEuk, and TheiaMeta. Additionally, it introduces two new workflows, improves on several workflows, and resolves various bugs.

Major restructuring and standardization of all Public Health Bioinformatics (PHB) workflows, including input and output nomenclature. A guide document has been produced to guide you on what the new nomenclature is, and can be found in the following page:

Migration to PHB v2

As a quality-of-life improvement, all runtime parameters, such as CPU, disk_size, docker and memory have been exposed on all tasks called by our workflows. These are now clearly indicated in our documentation:

Theiagen Public Health Resources

🆕 New workflows

🚀 Changes to existing workflows