Page Contents

Workflows available

Assembly_Fetch

Augur

Concatenate_Column_Content

Core_Gene_SNP

CZGenEpi_Prep

Freyja Wastewater Analysis

Kraken2

kSNP3

Lyve_SET

MashTree_FASTA

Mercury_Prep_N_Batch

Pangolin Update

Rasusa

Snippy_Streamline

Snippy_Tree

Snippy_Variants

SRA_Fetch

Terra_2_GISAID

Terra_2_NCBI

TheiaCoV Genomic Characterization

TheiaEuk

TheiaMeta

TheiaProk Workflow Series

TheiaValidate

The Guide to Phylogenetics

Usher_PHB

VADR_Update

Zip_Column_Content

Overview

This set-level workflow will create a file containing all of the items from a given column in a Terra Data Table. This is useful when you want to investigate many results files.

Inputs

This workflow runs on the set level.

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Tasks/Actions

The cat_files task will concatenate the indicated files into a single file with the name provided.

Outputs

<aside> 💡 Please note that if you run this workflow on the same Terra set (the same group of samples may be in multiple Terra sets), the results will overwrite each other. We recommend either:

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