This release expands automated quality control to new workflows and includes influenza segment thresholds; standardizes adapter, primer, and read trimming; and updates software versions. Documentation updates and various bug fixes are also implemented.

🚀 Changes to existing workflows

Changes to genomic characterization workflows

All Consensus Assembly Workflows

All Illumina workflows

All Viral Workflows

All TheiaCoV, all TheiaProk, and TheiaEuk Illumina PE workflows

All TheiaCoV, all TheiaProk, Freyja, tbprofiler-tNGS, and TheiaEuk Illumina workflows

All TheiaProk workflows

All TheiaViral workflows

All TheiaViral Illumina workflows

Freyja Workflows

TheiaCoV Illumina PE and TheiaCoV ONT

TheiaViral Illumina PE

Changes to phylogenetic workflows

All Phylogenetic workflows

Snippy Tree

Changes to data import workflows

BaseSpace_Fetch