This minor release adds new features and updates several tools, including ARTIC (v1.9.0) and the GAMBIT Prokaryotic database (v3.0.0). It also includes documentation updates and various bug fixes.

🚀 Changes to Existing Workflows

Augur_PHB

Clair3_Variants_ONT

Core_Gene_SNP

Freyja_FASTQ

Gambit_Query

kSNP4

Microreact_Export

NCBI-AMRFinderPlus

Pangolin_Update

Snippy_Streamline

Snippy_Streamline_FASTA

TheiaCoV_Illumina_PE

TheiaCoV_Illumina_SE

TheiaCoV_ONT

TheiaCoV_ClearLabs

TheiaCoV_FASTA

TheiaEuk_Illumina_PE