This major release adds four new workflows, updates the assembly algorithm for TheiaProk_ONT, and makes significant improvements to many workflows. Documentation updates and various bug fixes have also been implemented.

🆕 New workflows

Clair3_Variants_ONT_PHB

kSNP4_PHB

AMR_Search_PHB

Dorado_Basecalling_PHB

🚀 Changes to existing workflows

Changes to genomic characterization workflows

All Genomic Characterization Workflows

All ONT Workflows

All TheiaCoV Workflows

TheiaCoV_Illumina_PE and TheiaCoV_ONT: Influenza Characterization

TheiaCoV_Illumina_PE and TheiaCoV_Illumina_SE

TheiaEuk_Illumina_PE

All TheiaProk Workflows

TheiaProk_Illumina_PE

TheiaProk_ONT

All Freyja Workflows